IL_7PWO_139

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

ACA*UCCCU

Length

8 nucleotides

Bulged bases

7PWO|1|2|C|900

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_139 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.1655

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7PWO|1|2|A|899
7PWO|1|2|C|900
7PWO|1|2|A|902
*
7PWO|1|2|U|1303
7PWO|1|2|C|1304
7PWO|1|2|C|1305
7PWO|1|2|C|1306
7PWO|1|2|U|1307

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain Q1

Ribosomal protein S16

Chain c1

Ribosomal protein S28