IL_7PWO_149

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_149 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1713

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7PWO|1|2|C|1029
7PWO|1|2|C|1030
7PWO|1|2|C|1031
*
7PWO|1|2|G|1064
7PWO|1|2|A|1065
7PWO|1|2|G|1066

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain A1

40S ribosomal protein SA

Chain C1

Ribosomal protein S2

Chain D1

Ribosomal protein S3

Chain R1

Ribosomal protein S17