IL_7PWO_151

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGC*GAGGACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_151 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2518

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7PWO|1|2|C|1095
7PWO|1|2|G|1096
7PWO|1|2|G|1097
7PWO|1|2|C|1098
*
7PWO|1|2|G|1111
7PWO|1|2|A|1112
7PWO|1|2|G|1113
7PWO|1|2|G|1114
7PWO|1|2|A|1115
7PWO|1|2|C|1116
7PWO|1|2|G|1117

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain F1

Ribosomal protein S5

Chain Q1

Ribosomal protein S16

Chain R1

Ribosomal protein S17