IL_7PWO_157

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

G(4OC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_157 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0967

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|G|1324
7PWO|1|2|4OC|1325
7PWO|1|2|C|1326
7PWO|1|2|C|1327
*
7PWO|1|2|G|1413
7PWO|1|2|U|1414
7PWO|1|2|A|1415
7PWO|1|2|A|1416
7PWO|1|2|C|1417

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain n1

Ribosomal protein eL41