IL_7PWO_162

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUG*UG

Length

5 nucleotides

Bulged bases

7PWO|1|2|U|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_162 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.1479

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7PWO|1|2|C|1342
7PWO|1|2|U|1343
7PWO|1|2|G|1344
*
7PWO|1|2|U|1396
7PWO|1|2|G|1397

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain V2

Ribosomal protein L23

Chain X1

Ribosomal protein S23

Chain n1

Ribosomal protein eL41