IL_7PWO_167

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGAC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_167 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1397

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7PWO|1|2|C|1364
7PWO|1|2|G|1365
7PWO|1|2|G|1366
7PWO|1|2|A|1367
7PWO|1|2|C|1368
*
7PWO|1|2|G|1372
7PWO|1|2|G|1373
7PWO|1|2|A|1374
7PWO|1|2|A|1375
7PWO|1|2|G|1376

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain G1

40S ribosomal protein S6

Chain I1

40S ribosomal protein S8

Chain W2

Ribosomal protein L24A