IL_7PWO_173
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GCCAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_173 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2331
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7PWO|1|3|G|72
7PWO|1|3|C|73
7PWO|1|3|C|74
7PWO|1|3|A|75
7PWO|1|3|G|76
7PWO|1|3|U|77
7PWO|1|3|A|78
7PWO|1|3|C|79
*
7PWO|1|3|G|99
7PWO|1|3|G|100
7PWO|1|3|A|101
7PWO|1|3|A|102
7PWO|1|3|C|103
7PWO|1|3|A|104
7PWO|1|3|C|105
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D2
- Ribosomal protein L5
- Chain F2
- Ribosomal protein L7
- Chain I2
- Ribosomal protein L10
- Chain S2
- 60S ribosomal protein L18a
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