IL_7PWO_181

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7PWO|1|1|U|2282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_181 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1475

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7PWO|1|1|G|2250
7PWO|1|1|U|2251
7PWO|1|1|G|2252
*
7PWO|1|1|U|2280
7PWO|1|1|U|2281
7PWO|1|1|U|2282
7PWO|1|1|U|2283
7PWO|1|1|U|2284

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain I2

Ribosomal protein L10