IL_7PWO_182

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

(OMC)CCCG*CCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_182 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.2833

The information below is about IL_3LOA_001

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

7PWO|1|2|OMC|104
7PWO|1|2|C|105
7PWO|1|2|C|106
7PWO|1|2|C|107
7PWO|1|2|G|108
*
7PWO|1|2|C|210
7PWO|1|2|C|211
7PWO|1|2|C|212
7PWO|1|2|G|213

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain I1

40S ribosomal protein S8