IL_7PWO_187

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_187 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3308

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7PWO|1|2|C|919
7PWO|1|2|G|920
7PWO|1|2|G|921
*
7PWO|1|2|C|1163
7PWO|1|2|A|1164
7PWO|1|2|C|1165
7PWO|1|2|G|1166

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain S1

Ribosomal protein S18