IL_7PWO_188

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUG(OMG)*CCC

Length

7 nucleotides

Bulged bases

7PWO|1|2|U|1009

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_188 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2332

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PWO|1|2|G|1008
7PWO|1|2|U|1009
7PWO|1|2|G|1010
7PWO|1|2|OMG|1011
*
7PWO|1|2|C|1143
7PWO|1|2|C|1144
7PWO|1|2|C|1145

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain D1

Ribosomal protein S3

Chain d1

Ribosomal protein S29A