IL_7PZY_193

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7PZY|1|A|G|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_193 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0704

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7PZY|1|A|C|859
7PZY|1|A|G|860
7PZY|1|A|G|861
7PZY|1|A|G|862
7PZY|1|A|G|863
*
7PZY|1|A|C|935
7PZY|1|A|A|936
7PZY|1|A|A|937
7PZY|1|A|G|938

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain O

Ribosomal 40S subunit protein S13

Chain b

40S ribosomal protein S26