3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
7Q08|1|1|C|1192, 7Q08|1|1|A|1298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Q08_054 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.0792
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7Q08|1|1|G|1190
7Q08|1|1|A|1191
7Q08|1|1|C|1192
7Q08|1|1|A|1193
7Q08|1|1|C|1194
7Q08|1|1|C|1195
7Q08|1|1|A|1196
7Q08|1|1|C|1197
7Q08|1|1|A|1198
7Q08|1|1|A|1199
7Q08|1|1|A|1200
7Q08|1|1|A|1201
*
7Q08|1|1|U|1295
7Q08|1|1|G|1296
7Q08|1|1|A|1297
7Q08|1|1|A|1298
7Q08|1|1|A|1299
7Q08|1|1|A|1300
7Q08|1|1|U|1301
7Q08|1|1|G|1302
7Q08|1|1|G|1303
7Q08|1|1|A|1304
7Q08|1|1|U|1305
7Q08|1|1|G|1306
7Q08|1|1|G|1307
7Q08|1|1|C|1308
7Q08|1|1|G|1309
7Q08|1|1|C|1310

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain AG
Ribosomal 60S subunit protein L33A
Chain AN
Rpl40bp
Chain k
Ribosomal 60S subunit protein L3
Chain o
Ribosomal 60S subunit protein L7A
Chain r
Ribosomal 60S subunit protein L10
Chain w
Ribosomal 60S subunit protein L16A

Coloring options:


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