IL_7Q08_066

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

7Q08|1|1|A|1584, 7Q08|1|1|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_066 not in the Motif Atlas

Homologous match to IL_8C3A_067

Geometric discrepancy: 0.0645

The information below is about IL_8C3A_067

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7Q08|1|1|C|1528
7Q08|1|1|U|1529
7Q08|1|1|A|1530
7Q08|1|1|A|1531
7Q08|1|1|G|1532
*
7Q08|1|1|C|1581
7Q08|1|1|G|1582
7Q08|1|1|A|1583
7Q08|1|1|A|1584
7Q08|1|1|A|1585
7Q08|1|1|G|1586

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AH

Ribosomal 60S subunit protein L34B

Chain AK

Ribosomal protein L37

Chain AM

60S ribosomal protein L39

Chain j

Ribosomal 60S subunit protein L2A