3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
UGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
7Q08|1|1|U|1712, 7Q08|1|1|A|1725
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Q08_077 not in the Motif Atlas
Homologous match to IL_8C3A_079
Geometric discrepancy: 0.0915
The information below is about IL_8C3A_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

7Q08|1|1|U|1707
7Q08|1|1|G|1708
7Q08|1|1|G|1709
7Q08|1|1|A|1710
7Q08|1|1|A|1711
7Q08|1|1|U|1712
7Q08|1|1|U|1713
*
7Q08|1|1|G|1723
7Q08|1|1|G|1724
7Q08|1|1|A|1725
7Q08|1|1|G|1726
7Q08|1|1|A|1727
7Q08|1|1|U|1728
7Q08|1|1|G|1729

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AA
60S ribosomal protein L27
Chain AD
Ribosomal 60S subunit protein L30
Chain AH
Ribosomal 60S subunit protein L34B
Chain AQ
Ribosomal 60S subunit protein L43A
Chain O
Ribosomal 40S subunit protein S13
Chain z
Ribosomal protein L19

Coloring options:


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