3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Q08_133 not in the Motif Atlas
Homologous match to IL_8C3A_135
Geometric discrepancy: 0.0732
The information below is about IL_8C3A_135
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7Q08|1|1|U|3265
7Q08|1|1|U|3266
7Q08|1|1|U|3267
7Q08|1|1|G|3268
*
7Q08|1|1|C|3276
7Q08|1|1|U|3277
7Q08|1|1|U|3278
7Q08|1|1|A|3279

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AE
Ribosomal 60S subunit protein L31B
Chain k
Ribosomal 60S subunit protein L3
Chain x
Ribosomal 60S subunit protein L17B

Coloring options:


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