IL_7Q08_139

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_139 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1089

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7Q08|1|1|A|3307
7Q08|1|1|G|3308
7Q08|1|1|A|3309
7Q08|1|1|G|3310
*
7Q08|1|1|C|3325
7Q08|1|1|G|3326
7Q08|1|1|A|3327
7Q08|1|1|U|3328

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain z

Ribosomal protein L19