IL_7Q08_178

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UACAGG*UUGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_178 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.3968

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7Q08|1|A|U|480
7Q08|1|A|A|481
7Q08|1|A|C|482
7Q08|1|A|A|483
7Q08|1|A|G|484
7Q08|1|A|G|485
*
7Q08|1|A|U|499
7Q08|1|A|U|500
7Q08|1|A|G|501
7Q08|1|A|U|502
7Q08|1|A|A|503
7Q08|1|A|A|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain f

40S ribosomal protein S30