IL_7Q08_217

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

7Q08|1|A|A|1331, 7Q08|1|A|U|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_217 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.2522

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7Q08|1|A|A|1330
7Q08|1|A|A|1331
7Q08|1|A|U|1332
7Q08|1|A|A|1333
*
7Q08|1|A|U|1363
7Q08|1|A|U|1364
7Q08|1|A|C|1365
7Q08|1|A|U|1366

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal 40S subunit protein S3

Chain R

Ribosomal 40S subunit protein S16A

Chain V

Ribosomal 40S subunit protein S20