IL_7Q08_219
3D structure
- PDB id
- 7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cycloheximide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 7Q08|1|A|U|1376
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q08_219 not in the Motif Atlas
- Geometric match to IL_4V88_458
- Geometric discrepancy: 0.1929
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
7Q08|1|A|C|1375
7Q08|1|A|U|1376
7Q08|1|A|A|1377
*
7Q08|1|A|U|1393
7Q08|1|A|G|1394
7Q08|1|A|G|1395
7Q08|1|A|A|1396
7Q08|1|A|A|1397
7Q08|1|A|G|1398
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain S
- Ribosomal 40S subunit protein S17B
- Chain h
- Guanine nucleotide-binding protein subunit beta-like protein
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