IL_7Q08_232

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_232 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.175

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7Q08|1|A|U|1656
7Q08|1|A|G|1657
7Q08|1|A|A|1658
7Q08|1|A|G|1659
*
7Q08|1|A|C|1716
7Q08|1|A|A|1717
7Q08|1|A|A|1718
7Q08|1|A|A|1719

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 7

Ribosomal 60S subunit protein L24A

Chain H

40S ribosomal protein S6

Chain J

40S ribosomal protein S8