IL_7Q08_251

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_251 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.1561

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Q08|1|A|G|1527
7Q08|1|A|G|1528
7Q08|1|A|G|1529
7Q08|1|A|A|1530
7Q08|1|A|U|1531
7Q08|1|A|A|1532
*
7Q08|1|A|U|1553
7Q08|1|A|U|1554
7Q08|1|A|C|1555
7Q08|1|A|A|1556
7Q08|1|A|A|1557
7Q08|1|A|C|1558

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain T

Ribosomal 40S subunit protein S18B

Chain U

Ribosomal 40S subunit protein S19A