IL_7Q0F_068

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

7Q0F|1|1|U|1816, 7Q0F|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_068 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.1005

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7Q0F|1|1|G|1619
7Q0F|1|1|G|1620
7Q0F|1|1|A|1621
*
7Q0F|1|1|U|1814
7Q0F|1|1|U|1815
7Q0F|1|1|U|1816
7Q0F|1|1|U|1817
7Q0F|1|1|C|1818

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

Ribosomal 60S subunit protein L34B