IL_7Q0P_069

3D structure

PDB id

7Q0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GGAU*GUUUUC

Length

10 nucleotides

Bulged bases

7Q0P|1|1|U|1816, 7Q0P|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0P_069 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.3248

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7Q0P|1|1|G|1619
7Q0P|1|1|G|1620
7Q0P|1|1|A|1621
7Q0P|1|1|U|1622
*
7Q0P|1|1|G|1813
7Q0P|1|1|U|1814
7Q0P|1|1|U|1815
7Q0P|1|1|U|1816
7Q0P|1|1|U|1817
7Q0P|1|1|C|1818

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

Ribosomal 60S subunit protein L34B

Chain AL

Ribosomal 60S subunit protein L38