IL_7Q0P_158

3D structure

PDB id

7Q0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

7Q0P|1|A|C|114, 7Q0P|1|A|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0P_158 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1094

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7Q0P|1|A|U|113
7Q0P|1|A|C|114
7Q0P|1|A|G|115
7Q0P|1|A|U|116
*
7Q0P|1|A|A|298
7Q0P|1|A|A|299

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8

Chain M

Ribosomal 40S subunit protein S11A