IL_7Q0R_169
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 7Q0R|1|A|U|311, 7Q0R|1|A|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_169 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.0533
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7Q0R|1|A|U|309
7Q0R|1|A|A|310
7Q0R|1|A|U|311
7Q0R|1|A|C|312
7Q0R|1|A|A|313
7Q0R|1|A|A|314
*
7Q0R|1|A|U|346
7Q0R|1|A|U|347
7Q0R|1|A|U|348
7Q0R|1|A|C|349
7Q0R|1|A|A|350
7Q0R|1|A|A|351
7Q0R|1|A|C|352
7Q0R|1|A|G|353
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 40S ribosomal protein S8
- Chain M
- Ribosomal 40S subunit protein S11A
- Chain Y
- Ribosomal 40S subunit protein S23B
Coloring options: