IL_7Q0R_182
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7Q0R|1|A|A|577, 7Q0R|1|A|U|579, 7Q0R|1|A|U|580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_182 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.0934
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7Q0R|1|A|G|560
7Q0R|1|A|U|561
7Q0R|1|A|G|562
7Q0R|1|A|C|563
7Q0R|1|A|C|564
7Q0R|1|A|A|565
7Q0R|1|A|G|566
*
7Q0R|1|A|C|573
7Q0R|1|A|G|574
7Q0R|1|A|G|575
7Q0R|1|A|U|576
7Q0R|1|A|A|577
7Q0R|1|A|A|578
7Q0R|1|A|U|579
7Q0R|1|A|U|580
7Q0R|1|A|C|581
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal 40S subunit protein S3
- Chain Y
- Ribosomal 40S subunit protein S23B
- Chain f
- 40S ribosomal protein S30
- Chain i
- HABP4_PAI-RBP1 domain-containing protein
Coloring options: