IL_7Q4K_036

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7Q4K|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0787

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7Q4K|1|AA|U|684
7Q4K|1|AA|G|685
7Q4K|1|AA|U|686
7Q4K|1|AA|A|687
7Q4K|1|AA|G|688
*
7Q4K|1|AA|C|699
7Q4K|1|AA|G|700
7Q4K|1|AA|U|701
7Q4K|1|AA|A|702
7Q4K|1|AA|G|703
7Q4K|1|AA|A|704
7Q4K|1|AA|G|705
7Q4K|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA