IL_7Q4K_169

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7Q4K|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_169 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0741

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7Q4K|1|BA|C|2636
7Q4K|1|BA|U|2637
7Q4K|1|BA|G|2638
7Q4K|1|BA|A|2639
7Q4K|1|BA|G|2640
*
7Q4K|1|BA|C|2774
7Q4K|1|BA|G|2775
7Q4K|1|BA|A|2776
7Q4K|1|BA|G|2777
7Q4K|1|BA|A|2778
7Q4K|1|BA|U|2779
7Q4K|1|BA|G|2780
7Q4K|1|BA|A|2781
7Q4K|1|BA|G|2782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13