IL_7QCA_004

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGG*CAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_004 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2179

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7QCA|1|L50|G|31
7QCA|1|L50|G|32
7QCA|1|L50|G|33
*
7QCA|1|L50|C|375
7QCA|1|L50|A|376
7QCA|1|L50|A|377
7QCA|1|L50|C|378

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LJJ

eL37 LJJ

Chain LL0

60S ribosomal protein L13