IL_7QCA_005

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAG*CAAUGAC

Length

11 nucleotides

Bulged bases

7QCA|1|L50|U|81

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_005 not in the Motif Atlas

Geometric match to IL_4LCK_006

Geometric discrepancy: 0.1491

The information below is about IL_4LCK_006

Detailed Annotation

Kink-turn from T-box riboswitch

Broad Annotation

Kink-turn

Motif group

IL_51265.4

Basepair signature

cWW-L-tSH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7QCA|1|L50|G|68
7QCA|1|L50|G|69
7QCA|1|L50|A|70
7QCA|1|L50|G|71
*
7QCA|1|L50|C|78
7QCA|1|L50|A|79
7QCA|1|L50|A|80
7QCA|1|L50|U|81
7QCA|1|L50|G|82
7QCA|1|L50|A|83
7QCA|1|L50|C|84

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LHH

Ribosomal L29 protein

Chain LY0

60S ribosomal protein L26