IL_7QCA_016

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_016 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7QCA|1|L50|U|585
7QCA|1|L50|G|586
7QCA|1|L50|A|587
7QCA|1|L50|A|588
7QCA|1|L50|G|589
*
7QCA|1|L50|U|606
7QCA|1|L50|G|607
7QCA|1|L50|G|608
7QCA|1|L50|A|609
7QCA|1|L50|G|610

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LPP

60S ribosomal protein L37a

Chain LR0

60S ribosomal protein L19