IL_7QCA_021

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CACG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_021 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1468

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

7QCA|1|L50|C|724
7QCA|1|L50|A|725
7QCA|1|L50|C|726
7QCA|1|L50|G|727
*
7QCA|1|L50|C|804
7QCA|1|L50|A|805
7QCA|1|L50|A|806
7QCA|1|L50|G|807

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LQ0

60S ribosomal protein L18

Chain LT0

60s ribosomal protein L21