IL_7QCA_024

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GA*UUUC

Length

6 nucleotides

Bulged bases

7QCA|1|L50|U|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_024 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.1989

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7QCA|1|L50|G|734
7QCA|1|L50|A|735
*
7QCA|1|L50|U|793
7QCA|1|L50|U|794
7QCA|1|L50|U|795
7QCA|1|L50|C|796

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LF0

60S ribosomal protein L7

Chain LQ0

60S ribosomal protein L18

Chain LT0

60s ribosomal protein L21