IL_7QCA_045

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUAG*UGAGG

Length

9 nucleotides

Bulged bases

7QCA|1|L50|G|1401

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_045 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.1979

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7QCA|1|L50|C|1291
7QCA|1|L50|U|1292
7QCA|1|L50|A|1293
7QCA|1|L50|G|1294
*
7QCA|1|L50|U|1398
7QCA|1|L50|G|1399
7QCA|1|L50|A|1400
7QCA|1|L50|G|1401
7QCA|1|L50|G|1402

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LGG

Ribosomal protein L34

Chain LR0

60S ribosomal protein L19