IL_7QCA_057

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUCG*CAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_057 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.3641

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|1642
7QCA|1|L50|G|1643
7QCA|1|L50|U|1644
7QCA|1|L50|C|1645
7QCA|1|L50|G|1646
*
7QCA|1|L50|C|1671
7QCA|1|L50|A|1672
7QCA|1|L50|C|1673

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain S60

Small subunit ribosomal RNA; SSU rRNA