IL_7QCA_058

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGACACG*CAGAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_058 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.2754

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7QCA|1|L50|U|1647
7QCA|1|L50|G|1648
7QCA|1|L50|A|1649
7QCA|1|L50|C|1650
7QCA|1|L50|A|1651
7QCA|1|L50|C|1652
7QCA|1|L50|G|1653
*
7QCA|1|L50|C|1664
7QCA|1|L50|A|1665
7QCA|1|L50|G|1666
7QCA|1|L50|A|1667
7QCA|1|L50|A|1668
7QCA|1|L50|A|1669
7QCA|1|L50|G|1670

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LII

60S ribosomal protein L36

Chain LOO

60S ribosomal protein L44