IL_7QCA_060

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCAAACGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7QCA|1|L50|A|1717, 7QCA|1|L50|C|1723, 7QCA|1|L50|C|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_060 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0986

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7QCA|1|L50|C|1713
7QCA|1|L50|C|1714
7QCA|1|L50|A|1715
7QCA|1|L50|A|1716
7QCA|1|L50|A|1717
7QCA|1|L50|C|1718
7QCA|1|L50|G|1719
7QCA|1|L50|C|1720
7QCA|1|L50|C|1721
7QCA|1|L50|U|1722
7QCA|1|L50|C|1723
7QCA|1|L50|G|1724
*
7QCA|1|L50|C|1740
7QCA|1|L50|G|1741
7QCA|1|L50|C|1742
7QCA|1|L50|G|1743

Current chains

Chain L50

RNA 23S

Nearby chains

Chain S60

Small subunit ribosomal RNA; SSU rRNA