IL_7QCA_062

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_062 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1077

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|1826
7QCA|1|L50|C|1827
7QCA|1|L50|G|1828
7QCA|1|L50|G|1829
*
7QCA|1|L50|U|2354
7QCA|1|L50|A|2355
7QCA|1|L50|C|2356

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LO0

Ribosomal protein L13A

Chain LP0

60S ribosomal protein L17