IL_7QCA_066

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UAGU*AUGGG

Length

9 nucleotides

Bulged bases

7QCA|1|L50|G|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_066 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2674

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|U|1858
7QCA|1|L50|A|1859
7QCA|1|L50|G|1860
7QCA|1|L50|U|1861
*
7QCA|1|L50|A|1974
7QCA|1|L50|U|1975
7QCA|1|L50|G|1976
7QCA|1|L50|G|1977
7QCA|1|L50|G|1978

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LN0

Ribosomal protein L15

Chain LOO

60S ribosomal protein L44