IL_7QCA_069

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUUGAG*CAUGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_069 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3824

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7QCA|1|L50|A|1879
7QCA|1|L50|U|1880
7QCA|1|L50|U|1881
7QCA|1|L50|G|1882
7QCA|1|L50|A|1883
7QCA|1|L50|G|1884
*
7QCA|1|L50|C|1934
7QCA|1|L50|A|1935
7QCA|1|L50|U|1936
7QCA|1|L50|G|1937
7QCA|1|L50|A|1938
7QCA|1|L50|U|1939

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LII

60S ribosomal protein L36

Chain SB0

eS1 SB0