IL_7QCA_079

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7QCA|1|L50|G|2313, 7QCA|1|L50|A|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_079 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1022

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QCA|1|L50|C|2247
7QCA|1|L50|U|2248
7QCA|1|L50|C|2249
*
7QCA|1|L50|G|2311
7QCA|1|L50|U|2312
7QCA|1|L50|G|2313
7QCA|1|L50|A|2314
7QCA|1|L50|G|2315

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LV0

Ribosomal protein L23