IL_7QCA_084

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUGAA*UGACUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_084 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3524

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|2367
7QCA|1|L50|U|2368
7QCA|1|L50|U|2369
7QCA|1|L50|G|2370
7QCA|1|L50|A|2371
7QCA|1|L50|A|2372
*
7QCA|1|L50|U|2499
7QCA|1|L50|G|2500
7QCA|1|L50|A|2501
7QCA|1|L50|C|2502
7QCA|1|L50|U|2503
7QCA|1|L50|C|2504

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LO0

Ribosomal protein L13A