IL_7QCA_089

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_089 not in the Motif Atlas

Geometric match to IL_4LFB_006

Geometric discrepancy: 0.2812

The information below is about IL_4LFB_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7QCA|1|L50|G|2425
7QCA|1|L50|G|2426
7QCA|1|L50|U|2427
*
7QCA|1|L50|A|2440
7QCA|1|L50|A|2441
7QCA|1|L50|C|2442

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LDD

60S ribosomal protein L31

Chain LR0

60S ribosomal protein L19