IL_7QCA_096

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

7QCA|1|L70|A|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_096 not in the Motif Atlas

Homologous match to IL_5TBW_372

Geometric discrepancy: 0.2296

The information below is about IL_5TBW_372

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7QCA|1|L70|C|15
7QCA|1|L70|U|16
*
7QCA|1|L70|A|62
7QCA|1|L70|A|63
7QCA|1|L70|G|64

Current chains

Chain L70

RNA 5S

Nearby chains

Chain L50

Large subunit ribosomal RNA; LSU rRNA

Chain LD0

60S ribosomal protein L5

Chain LI0

S60 ribosomal protein L10

Chain LJ0

60S ribosomal protein L11