IL_7QCA_166

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_166 not in the Motif Atlas

Homologous match to IL_8P9A_249

Geometric discrepancy: 0.4128

The information below is about IL_8P9A_249

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7QCA|1|L50|C|484
7QCA|1|L50|A|485
7QCA|1|L50|U|486
*
7QCA|1|L50|G|544
7QCA|1|L50|A|545
7QCA|1|L50|G|546

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LC0

60S ribosomal protein L4

Chain LL0

60S ribosomal protein L13

Chain LN0

Ribosomal protein L15

Chain LQ0

60S ribosomal protein L18