IL_7QCA_173
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CGAGUAU*AGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QCA_173 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.2039
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
7QCA|1|L70|C|72
7QCA|1|L70|G|73
7QCA|1|L70|A|74
7QCA|1|L70|G|75
7QCA|1|L70|U|76
7QCA|1|L70|A|77
7QCA|1|L70|U|78
*
7QCA|1|L70|A|98
7QCA|1|L70|G|99
7QCA|1|L70|A|100
7QCA|1|L70|A|101
7QCA|1|L70|A|102
7QCA|1|L70|G|103
Current chains
- Chain L70
- RNA 5S
Nearby chains
- Chain L50
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD0
- 60S ribosomal protein L5
- Chain LF0
- 60S ribosomal protein L7
- Chain LI0
- S60 ribosomal protein L10
- Chain LS0
- 60S ribosomal protein L20
- Chain LT0
- 60s ribosomal protein L21
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