IL_7QG8_012

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7QG8|1|0|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1207

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7QG8|1|0|G|147
7QG8|1|0|G|148
7QG8|1|0|A|149
7QG8|1|0|U|150
7QG8|1|0|A|151
7QG8|1|0|A|152
7QG8|1|0|C|153
*
7QG8|1|0|G|168
7QG8|1|0|C|169
7QG8|1|0|U|170
7QG8|1|0|A|171
7QG8|1|0|A|172
7QG8|1|0|U|173
7QG8|1|0|A|174
7QG8|1|0|C|175

Current chains

Chain 0

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20