IL_7QG8_014

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7QG8|1|0|U|244, 7QG8|1|0|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7QG8|1|0|G|242
7QG8|1|0|A|243
7QG8|1|0|U|244
7QG8|1|0|U|245
7QG8|1|0|A|246
7QG8|1|0|G|247
*
7QG8|1|0|C|277
7QG8|1|0|G|278
7QG8|1|0|A|279
7QG8|1|0|C|280
7QG8|1|0|G|281
7QG8|1|0|A|282
7QG8|1|0|U|283
7QG8|1|0|C|284

Current chains

Chain 0

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S12

Chain J

30S ribosomal protein S17