IL_7QG8_038

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0858

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7QG8|1|0|G|887
7QG8|1|0|G|888
7QG8|1|0|A|889
7QG8|1|0|G|890
7QG8|1|0|U|891
7QG8|1|0|A|892
7QG8|1|0|C|893
7QG8|1|0|G|894
*
7QG8|1|0|U|905
7QG8|1|0|A|906
7QG8|1|0|A|907
7QG8|1|0|A|908
7QG8|1|0|A|909
7QG8|1|0|C|910

Current chains

Chain 0

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S12